Description

Rapeseed (Brassica napus subsp. napus), also known as rape and oilseed rape, is a bright-yellow flowering member of the family Brassicaceae (mustard or cabbage family), cultivated mainly for its oil-rich seed, which naturally contains appreciable amounts of erucic acid. The term "canola" denotes a group of rapeseed cultivars that were bred to have very low levels of erucic acid and which are especially prized for use as human and animal food. Rapeseed is the third-largest source of vegetable oil and the second-largest source of protein meal in the world.

Whole Genomes

Whole Genome Sequences & Annotations for Brassica napus

• Brassica napus Da-Ae

S genes

Brassica napus Da-Ae S genes

Query	Chromosome	Size(bp)	Coordinates	BLASTp Hit	BLASTp %ID
SRK1	NC_063434.1 (A1)	30963416	20540509-20541805,20540041-20540426, 20539748-20539958,20539421-20539658, 20539186-20539336,20538803-20539096	SRKb|AB052756.1_prot_BAB40987.1_1	34
SCR1	NC_063434.1 (A1)	30963416	20220145-20220214,20220313-20220533	XP_018438641.1	87
SRK2	NC_063449.1 (C6)	48209797	39370728-39372048,39372677-39372817, 39372915-39373093,39376096-39376306, 39376398-39376635,39376760-39376910, 39376997-39377326	sp|Q09092|SRK6_BRAOV	67
SCR2	NC_063449.1 (C6)	48209797	39308868-39308953,39308656-39308806	BAD29945.1	80

Downloads

The Brassica napus S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Brassica_napus

Publications

Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VH, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CH, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science. 2014 Aug 22;345(6199):950-3. doi: 10.1126/science.1253435.

Sun F, Fan G, Hu Q, Zhou Y, Guan M, Tong C, Li J, Du D, Qi C, Jiang L, Liu W, Huang S, Chen W, Yu J, Mei D, Meng J, Zeng P, Shi J, Liu K, Wang X, Wang X, Long Y, Liang X, Hu Z, Huang G, Dong C, Zhang H, Li J, Zhang Y, Li L, Shi C, Wang J, Lee SM, Guan C, Xu X, Liu S, Liu X, Chalhoub B, Hua W, Wang H. The high-quality genome of Brassica napus cultivar 'ZS11' reveals the introgression history in semi-winter morphotype. Plant J. 2017 Nov;92(3):452-468. doi: 10.1111/tpj.13669.

Song JM, Guan Z, Hu J, Guo C, Yang Z, Wang S, Liu D, Wang B, Lu S, Zhou R, Xie WZ, Cheng Y, Zhang Y, Liu K, Yang QY, Chen LL, Guo L. Eight high-quality genomes reveal pan-genome architecture and ecotype differentiation of Brassica napus. Nat Plants. 2020 Jan;6(1):34-45. doi: 10.1038/s41477-019-0577-7.

Davis JT, Li R, Kim S, Michelmore R, Kim S, Maloof JN. Whole-genome sequence of synthetically derived Brassica napus inbred cultivar Da-Ae. G3 (Bethesda). 2023 Apr 11;13(4):jkad026. doi: 10.1093/g3journal/jkad026.