Description

Brassica rapa is a plant species growing in various widely cultivated forms including the turnip (a root vegetable); Komatsuna, napa cabbage, bomdong, bok choy, and rapini. Brassica rapa subsp. oleifera is an oilseed which has many common names, including rape, field mustard, bird's rape, and keblock. The term rapeseed oil is a general term for oil from Brassica species. Food grade oil made from the seed of low-erucic acid Canadian-developed strains is also called canola oil, while non-food oil is called colza oil. Canola oil is sourced from three species of Brassica plants: Brassica rapa and Brassica napus are commonly grown in Canada, while Brassica juncea (brown mustard) is a minor crop for oil production.

Whole Genomes

Whole Genome Sequences & Annotations for Brassica rapa

• Brassica rapa Chiifu_V4.0

S genes

Brassica rapa Chiifu_V4.0 S genes

Query	Chromosome	Size(bp)	Coordinates	BLASTp Hit	BLASTp %ID
SRK	A07	38320614	32624729-32626049,32626680-32626826, 32626924-32627105,32631508-32631722, 32631821-32632034,32632142-32632211, 32632400-32632695	sp|Q09092|SRK6_BRAOV	65.69
SCR	A07	38320614	32618152-32618068,32617971-32617778	BAD29945.1	73.6

Downloads

The Brassica rapa S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Brassica_rapa

Publications

Zhang L, Liang J, Chen H, Zhang Z, Wu J, Wang X. A near-complete genome assembly of Brassica rapa provides new insights into the evolution of centromeres. Plant Biotechnol J. 2023 May;21(5):1022-1032. doi: 10.1111/pbi.14015.

Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park BS, Weisshaar B, Liu B, Li B, Liu B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, Lin C, Edwards D, Mu D, Shen D, Soumpourou E, Li F, Fraser F, Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Wang H, Belcram H, Zhou H, Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IA, Batley J, Kim JS, Just J, Li J, Xu J, Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Wang J, Hatakeyama K, Wu K, Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ, Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon SJ, Choi SR, Lee TH, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y, Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z; Brassica rapa Genome Sequencing Project Consortium. The genome of the mesopolyploid crop species Brassica rapa. Nat Genet. 2011 Aug 28;43(10):1035-9. doi: 10.1038/ng.919.

Zhang L, Cai X, Wu J, Liu M, Grob S, Cheng F, Liang J, Cai C, Liu Z, Liu B, Wang F, Li S, Liu F, Li X, Cheng L, Yang W, Li MH, Grossniklaus U, Zheng H, Wang X. Improved Brassica rapa reference genome by single-molecule sequencing and chromosome conformation capture technologies. Hortic Res. 2018 Aug 15;5:50. doi: 10.1038/s41438-018-0071-9. Erratum in: Hortic Res. 2019 Nov 13;6:124. doi: 10.1038/s41438-019-0210-y.

Belser C, Istace B, Denis E, Dubarry M, Baurens FC, Falentin C, Genete M, Berrabah W, Chèvre AM, Delourme R, Deniot G, Denoeud F, Duffé P, Engelen S, Lemainque A, Manzanares-Dauleux M, Martin G, Morice J, Noel B, Vekemans X, D'Hont A, Rousseau-Gueutin M, Barbe V, Cruaud C, Wincker P, Aury JM. Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps. Nat Plants. 2018 Nov;4(11):879-887. doi: 10.1038/s41477-018-0289-4.